AutoPot: New Software Automates Construction of Machine-Learning Potentials for Computational Physics
A multi-institution research team has introduced an 'information-matching' active learning framework to construct interatomic potentials specifically tailored for predicting plastic strength in metals. The method selects training data by ensuring it provides sufficient parameter-space information to meet prescribed uncertainty targets for chosen quantities of interest, rather than simply minimizing overall parameter uncertainty. This approach could improve the reliability of large-scale atomistic simulations while reducing the computational cost of training data generation.
Researchers from Brigham Young University, Lawrence Livermore National Laboratory, the University of Minnesota, UCLA, and Cross Stream Consulting have published a preprint describing an inverse design strategy for building bespoke interatomic potentials (IPs) using an information-matching (IM) active learning framework. Interatomic potentials allow atomistic simulations at scales inaccessible to first-principles methods, but their accuracy depends heavily on how training data is selected. The IM approach differs from conventional active learning strategies by requiring that selected training data deliver at least as much parameter-space information as needed to achieve user-specified uncertainty targets for particular material properties. Because directly simulating plastic strength is computationally expensive, the team employed an indirect strategy targeting cheaper intermediate quantities of interest that correlate with strength. Results showed that IM enabled precise parameter constraints with minimal training data, yielding accurate predictions for both intermediate and final quantities. However, the authors acknowledge that model error remains a key limitation, and they propose a post hoc uncertainty inflation correction as a practical mitigation. The study illustrates both the potential and the current boundaries of uncertainty-aware active learning for complex materials property prediction.
What's missing
The study focuses on metals and plastic strength; generalizability to other material classes or properties is not demonstrated. The specific metals studied and the quantitative benchmarks against competing active learning methods are not detailed in the abstract, leaving the magnitude of improvement over prior approaches unclear.
What different sources said
- arXiv cs.LGCenter
Inverse design of bespoke interatomic potentials via active learning by information-matching
Related
Gut Bacteria Enzyme Found to Break Down Heat-Processed Food Compounds, Producing Novel Biogenic Amines
Researchers have discovered that an enzyme in common gut bacteria can degrade N-epsilon-carboxymethyllysine (CML), a compound formed during thermal food processing, producing previously unknown biogenic amines. The enzyme, ornithine decarboxylase SpeC from enterobacteria, acts on CML and related modified lysine derivatives through a low-level 'underground' catalytic activity. This finding suggests a previously unrecognized communication axis between thermally processed dietary compounds and gut microbial physiology, with potential implications for host health.
Full-Length Gene Sequencing Reveals Two Distinct Bacterial Communities in Black-Legged Ticks Expanding Into Canada
Researchers used Oxford Nanopore full-length 16S rRNA gene sequencing to characterize the microbiome of Ixodes scapularis black-legged ticks collected in Nova Scotia, Canada, distinguishing between tick-adapted bacteria and environmentally acquired bacteria. The study comes as I. scapularis — the primary vector of Lyme disease — is rapidly expanding northward into Canada due to climate change. The findings suggest that environmentally derived bacteria in tick microbiomes are not mere contamination, which has implications for how tick microbiome data is collected and interpreted across surveillance studies.
Study Identifies Metabolic Link Between Cell Envelope Stress and Biofilm Formation in Bacteria
Researchers have discovered that the metabolite acetyl-CoA directly inhibits enzymes that degrade the bacterial signaling molecule c-di-GMP, connecting cell envelope biosynthesis stress to biofilm formation in Pseudomonas aeruginosa. The study found that sub-inhibitory concentrations of antibiotics targeting early peptidoglycan biosynthesis — but not other antibiotic classes — elevate c-di-GMP levels by reducing phosphodiesterase activity, with acetyl-CoA competing for the enzyme active site. Because the relevant enzyme domain is broadly conserved across bacterial species, this checkpoint mechanism may be widespread and could have implications for understanding antibiotic-induced biofilm responses.